Protein Info for BBR_RS17070 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 783 PF14498: Glyco_hyd_65N_2" amino acids 4 to 258 (255 residues), 141.7 bits, see alignment E=4.1e-45 PF21307: Glyco_hydro_95_C" amino acids 704 to 758 (55 residues), 49 bits, see alignment 6.9e-17

Best Hits

KEGG orthology group: None (inferred from 96% identity to bll:BLJ_0327)

Predicted SEED Role

"putative large secreted protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (783 amino acids)

>BBR_RS17070 hypothetical protein (Bifidobacterium breve UCC2003)
MKLTFDGISSCWEEGIPLGNGRMGAVLCSEPETDVLYLNDDTLWSGYPHAETSPVTPEIV
AKARQASLQDDYNAATRIIKDATLQEKDEQIYEPFGTARIQYSTSADGRESMKRQLDLAR
ALAGETFQMGDANVHVDAWCSEPDDLLVYRMSSDASIDVNISVSGTFLKQSRASMETVFD
GHRATLVVMGRMPGLNIGLLPHPSENPWEDEQDGTGMAYAGAFSLTVTGGDVNVGDNSLQ
CSNITGLSLRFRSMSGFRGSDQQPERSMTVIADHLEKTIDEWSTDLRTMFDRHIADYRRY
FDRVAIHLGSAHDDDTELPFSAILRSDENKEPHRLEMLAEAMFDFGRYLLISSSRPHTQP
ANLQGIWNHKDFPNWYSAYTTNINVEMNYWMTGPCALQELIEPLVSMNEELLVPGHDAAD
RILGCRGSAVFHNVDLWRRALPANGDPMWSFWPFGQAWMCRNLFDEYLFNQDASYLARIW
PIMRDNARFCMDFLSETKHGLAPSPATSPENCFLVNGELVSVAQSSENATAIVRNLLDDL
IQASHDLENLDEEDRDLVHEAESVRSPLAETRLGADGRILEWNDEFIESDPQHRHLSHLY
ELHPGAGITSKTPHLEEAARKSLEVRGDDGSGWSIVWRMIMWARLRDAEHAKRIIGMFLR
PVDANAETNLLGGGVYGSGLCAHPPFQIDGNLGFPAALSEMLVQSHDGWIRILPALPEDW
HEGTFHALRARGGIQVDAIWTDQTVEYTLRCSKPTEITLNVLGTDMGRVALSPDKPFKGS
IRR