Protein Info for BBR_RS16965 in Bifidobacterium breve UCC2003

Annotation: ATP-dependent DNA helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 759 PF13245: AAA_19" amino acids 191 to 554 (364 residues), 39.6 bits, see alignment E=1.1e-13

Best Hits

KEGG orthology group: None (inferred from 90% identity to bll:BLJ_1305)

Predicted SEED Role

"Superfamily I DNA and RNA helicases"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (759 amino acids)

>BBR_RS16965 ATP-dependent DNA helicase (Bifidobacterium breve UCC2003)
MSSYASQLHEEQQAVDRAYGRLDDLRAEMWQRLSTVRAAGSHGSPTQRTERDSFATMYED
RLTQLRSVEDRLVFGRLDSQDGTRHYIGRIGLSSTDHEPILTDWRAEAARPFYEATPSNH
GDIVMRRHITLSFREVVGVEDEVLDVHSDQVGQASTAGTLTGEGALLASLSSRRTGKMTD
IVATIQAEQDRIIRSDMNRAVVVQGGPGTGKTAVALHRAAYLLYTHRRTLERSGVLVVGP
SSAFLHYIDQVLPSLGETGVVSRTISDLIPGITASAIDTPQAAKLKGDRRMAQVIANAIA
SRIRVPGNLPTVTISGIQIPMLAVDIEQAQSDAKRTRQPHNKARETFIRSMLRSMQTRYA
EQLDYTPDQAELNRAMSLLRMNEQVRKTLNLCWLPMTAPWLIDQLFAHPERLKSLAGWMT
DDDLATLARPKGSPLTRSDIPLLDEAMDLLGPDPKTLAKQSAANARRAAEEQYAKDTLAA
TGLGQGIVSSQMLLDQMNSDDGELTAQRAAADREWTYGHIVVDEAQELTAMDWRMLIRRC
PSRSFTIVGDVAQTSALAGTRRWDKTMNRLFGEGHWDLNELTINYRNPQEVSDLASRFAQ
NEGLYISTVNAVRALPDSVSRHVVDDMKALLTVTSNQAAQLANHFVSADGTGRIAIICPD
DLIKPVREAVRHRLSSLMAPSEYQRLIDQSEWDEQISVCGTEMVKGLEFDAVIVIEPGRI
EDDAPSRLVAASDLYVATTRPTQKLVIVRTKEDERSLNI