Protein Info for BBR_RS16640 in Bifidobacterium breve UCC2003

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 334 transmembrane" amino acids 68 to 89 (22 residues), see Phobius details amino acids 136 to 159 (24 residues), see Phobius details amino acids 170 to 188 (19 residues), see Phobius details amino acids 194 to 213 (20 residues), see Phobius details amino acids 248 to 268 (21 residues), see Phobius details amino acids 302 to 323 (22 residues), see Phobius details PF12911: OppC_N" amino acids 54 to 104 (51 residues), 44.6 bits, see alignment 1e-15 PF00528: BPD_transp_1" amino acids 147 to 332 (186 residues), 104.6 bits, see alignment E=5.7e-34

Best Hits

Swiss-Prot: 34% identical to GSID_SHIF8: Glutathione transport system permease protein GsiD (gsiD) from Shigella flexneri serotype 5b (strain 8401)

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 98% identity to bln:Blon_0924)

MetaCyc: 34% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (334 amino acids)

>BBR_RS16640 ABC transporter permease (Bifidobacterium breve UCC2003)
MANETTENELNQTGEPGTEYFMETLPGQDRYVAPLEETPLQDVDSVDESAPATSMWADAW
RTLRRNPLFIISGLLILFIIVVAIAPGLFTKQDPNACDLGNSLSPASAGHPFGYDLQGCD
VYTRVIYGTRTSLSVGVLSTLLVVIVGTLIGAVAGFFGGWVDAVLSRINDIFFALPMLLG
AIVVLQMFKTSKSIWKIVLVLTLFGWVGVCRIARSAVLESKNLEFNTASTALGSTPARNL
FRHILPNSLAPIIVIATTSLASYIVAEATLSFLGVGLPTTTVSWGGDISSAQTNLQTDPM
VLFYPSAALAITVLAFIMMGDAVKDALDPKSRTA