Protein Info for BBR_RS16460 in Bifidobacterium breve UCC2003

Annotation: ATP-dependent helicase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1693 PF00270: DEAD" amino acids 34 to 239 (206 residues), 112 bits, see alignment E=6.3e-36 PF04851: ResIII" amino acids 36 to 184 (149 residues), 32.4 bits, see alignment E=2.2e-11 PF00271: Helicase_C" amino acids 458 to 525 (68 residues), 50.4 bits, see alignment (E = 6.1e-17) PF08494: DEAD_assoc" amino acids 819 to 1007 (189 residues), 212.4 bits, see alignment E=1.4e-66

Best Hits

Predicted SEED Role

"Probable ATP-dependent helicase lhr (EC 3.6.1.-)" (EC 3.6.1.-)

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.6.1.-

Use Curated BLAST to search for 3.6.1.-

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1693 amino acids)

>BBR_RS16460 ATP-dependent helicase (Bifidobacterium breve UCC2003)
MFPRIATIEHMCESLSLFSEPTKAWFEHTFGQPTEAQAQAWPAIHSGRNVLVIAPTGSGK
TLAAFLSAIDRLMTVSRTRRAGVRVLYVSPLKALAVDVAKNLEQPLEGIAAQCEAQGLPA
PKIAVANRSGDTTAQERRRIASHPPDILVTTPESLYLLLTSKAGRILGTVDTVIVDEIHA
VAGTKRGSHLALSLERLENLVAESRRRDAMDRNDGESKVSDDSGNEPLLQRIGLSATVNP
PEEAARFLTGGRPVTIVNPGGRPAMDLRMVEPLENMRDLQSVNAKQRVGGVDSERPTPHI
SGVTPAMQRLAERKGIAQTGDSGLSAGGNGVLVGGEAGAGGDGALLSGERTTGGAFDSAV
LVGAAGDRTSGSIWPVVERSVLDEILAHRTTLVFVNSRGVAEKLTARLNDLYAQTRHEVD
PDLVRDMGSPEGREGFASHYDAVVGSTTMLVGSHEGDDVIAMAHHGSVSKERRKMIEERL
KRGELRCVVATSSLELGIDMGSVDLVIQIDTPLSVSSGLQRVGRADHQVGGVSHALFYPL
TRQQIVTGAASLESMIAGDIEPLAVLKNPLDVLAQQTVAAAVMHDLKADDWYVTVRRSAP
FADLPRDMFDAVIGMMSGEYNTEEFSAFRPRLVWNRDNGLISARPGSQKVAVTSGGTIPD
RGLYTVVLPEVDAGKGQRRVGELDEEMVYESRVGDVITLGTSTWQIQDITRDRVVVTPAP
GRTARLPFWHGEGAGRDYGFSRAIARFTREIADGLVMEQGGYSGFPLRGELSAERTEGRS
TPTFTHAILTRLHQDGLDSNAIANLARLLSEQRAATGAVPSDRTLIVERTRDEDGGWRIV
LLSPFGRRVHEPWSMAISRRLSQRYGFDVQVYAADDGIVLQLPEGDGHILACDLFLFDPE
DLRADVERQVGKSVLFTSRFRECAARSLFMPRSDPGRRVPLWQQRLRGAQLLQSARTVKN
FPLLLETARECLQDVYDMPALNEVMTGLHSGTIALKDVETESPSPFAENTLFGFVGTVMY
QYDQPQAERSTQLLSLDSQMLERLLGTTDMAKVLNPDVIREVEQELEKRTFWNELAADDV
TGQVTRYAKTHGPFTADQIIAYLHLDAASVVHALDELAAKGDLLQGHFVDSTSCSRWREL
DAKRTEGGPYPEKGHPQSTPSTAPASGSEQQWLHKDVFRRIRSRSLDKARKAVRPVEPEA
FQMFLIDRQGIGPVGGERYEGTDGLMRVIEQLEGVALPAGLWETAIFPARVRDYQPSMLD
ELLTGGDVVWVGSKAGGTGALEPGEIAFHPADSVLLGDTEASELSAGAASSGRFDSKPDA
SADGDSETMPESIMTALTSGGAFHARQLADAAKRVWNETSEPDFNPDTGEIIPQEWSERQ
FKDALWSLVWQGRISNSSFAPVRALTAGTGGSRKASTSRRRGRVTPIRRASADMTLGGLW
SAVPGMGEDESTERALALVEALLDRYGVIAQPLIDKEDIPGGYSAVYPVLKRMEEHGRLV
RGMFIHGFGAAQFAESDTVDALRHPSAHRSQSVVAVSVLDPANLSGSAIGWPDVPVSAGR
PVRRAGAVVVLGSQGALLYAAAKAKHLTAFQRSADVGVVSAGSIETGAASNGLTEGGVSS
TESAFETSPDFGMTNDEQLRKAATELAYALKRSGNGTVTFSDMNGEPLNARHPFARILHQ
AGFIPVPQGMRLY