Protein Info for BBR_RS16335 in Bifidobacterium breve UCC2003

Annotation: PKD domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 900 927 signal peptide" amino acids 1 to 29 (29 residues), see Phobius details PF03644: Glyco_hydro_85" amino acids 120 to 432 (313 residues), 307.7 bits, see alignment E=2.1e-95 PF00801: PKD" amino acids 703 to 770 (68 residues), 36.4 bits, see alignment 7.9e-13 PF00754: F5_F8_type_C" amino acids 800 to 911 (112 residues), 81.3 bits, see alignment E=1.4e-26

Best Hits

KEGG orthology group: None (inferred from 100% identity to blj:BLD_0197)

Predicted SEED Role

"Endo-beta-N-acetylglucosaminidase"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (927 amino acids)

>BBR_RS16335 PKD domain-containing protein (Bifidobacterium breve UCC2003)
MNKTMTWRRVLAASLAAMLAMSLAACSGGTSATKYTITPENENEELVLGNRPEASYWFPE
DLLKWNADKDPDLAYNVSTVPLAKRVDKADLKPVNDTQNTDTKVMAISIMNSSTSGNAPH
GLNTANANTFSYWQYVDELVYWGGSSGEGIIVPPSPDVTDMGHTNGVPVLGTVFFPQNVS
GGKVEWLDQTLAQKSDGSFPVADKLIEVATTYGFDGWFINQETEGENETSLGADYATKMQ
AFIAYLKKQAPDLRVVYYDSMTKDGSIDWQNALTDENSMYMTDGDHPIADEMFLNFWWTE
DKLAGDDLLAASATKAKELGIDPYSLYAGIDVQADGYDTPVKWNLFAGKDGKTHTSLGLY
CPSWAYWSAGNPTTFRKNESRLWVNDEGNPSVSTPYEDDEKWTGVSNYVAEQSAVTSLPF
VTNFNNGSGYSFFREGKQISKMDWNNRSVSDIQPTYRWIVADEGGNKTKADYSDADAWYG
GSSLKFSGKVAKDGKTMVKLYSASVKTGAKPTLSIAAKANVDTDLKAVLTFADGSVETVN
GKKKVGNDWGVIDYDIAKLSNKTLTGIDFTYQSSEDKTGYELLLGNITLKDGSEETELGK
VTEVKVDDSEFDDDALYAGARISWKTDGKAPAYEIYQINEDKSRSFLGVSNVENFYANAL
TRVGETNNTTFEIVPVDRYGTQGTSAKADMDWPDNSKPKAGATASRTLLNVGDEVTFTSA
SSKNTAEVAWFLPGSSKEHATGKSVTVTYDKEGVYDVEITAKNKSGEATATLKGQIVVSA
DVMDLVLLSQGAQVSADGFTNGNEKPEFAVDGDVKTKWCVTGPAPHELVVDLGAPKTVSQ
VDISHAQAGGEDASMNTQEYAIEVSEDGTEYTQVALVKGNTEGATSNAFAPVNARYVKLV
VNKPTQGSDTAARIYEMQVRGADGAIL