Protein Info for BBR_RS16200 in Bifidobacterium breve UCC2003

Annotation: zinc ribbon domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 406 PF13240: zinc_ribbon_2" amino acids 4 to 23 (20 residues), 26.7 bits, see alignment (E = 1.8e-10)

Best Hits

KEGG orthology group: None (inferred from 99% identity to bbp:BBPR_0018)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (406 amino acids)

>BBR_RS16200 zinc ribbon domain-containing protein (Bifidobacterium breve UCC2003)
MIMCPDCGTSISDKALTCPYCGYAGNDPATPIADQSIGYEVVPRIKMSIERWDPKSRSLT
EETSEMPIQARRAVARWLGSLKDWESLQVVAPALVGFVKEFLGDDKVRMVADLPAEIMRM
VKEGRLRFRPDSEGRIMPFVYDDKGIYKQVRLNMETVPPDVTNAMRQLETQAALSMVLAE
VRSLRDQLEGIRIGLQNDRLALAEGAWDKLMQAREVEDSRLRDALIMQALSSATDAKRTL
MRNFTQNANYLIEQSDIDLNRNPLALVRRLGESLNGNERIHQAAADAFDDLVQITNVVRV
EGEGYSMLGQERAARACLDQFSEFIKANGLDEDTLLVIDGGLPSERKMPELVDQFAELSK
RISLLGGMSLEQGIPSGLLEPYRPRPDGASAITDKETEDEPIQEED