Protein Info for BBR_RS15565 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 394 transmembrane" amino acids 20 to 42 (23 residues), see Phobius details amino acids 81 to 102 (22 residues), see Phobius details amino acids 112 to 130 (19 residues), see Phobius details amino acids 136 to 155 (20 residues), see Phobius details amino acids 188 to 205 (18 residues), see Phobius details amino acids 217 to 237 (21 residues), see Phobius details amino acids 267 to 293 (27 residues), see Phobius details amino acids 326 to 351 (26 residues), see Phobius details amino acids 372 to 393 (22 residues), see Phobius details

Best Hits

Predicted SEED Role

"FIG00425886: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (394 amino acids)

>BBR_RS15565 hypothetical protein (Bifidobacterium breve UCC2003)
MNTSDRQIMETDRNRELGLIPAMVMAIIAALSGAGVSFAPLYERIWGGMMLHPNCPTIGR
MTYYLSGQATGDYGACVTSPLWFLAVTALSVVAIICLTVAGVQGFARHRLRTVICVFLAA
VAVAFILVLSANTKIVMLWAIHAATWLVYAILAAYSRNSTSIQQQHIADLTNLTGSDKSA
SERGGWTLVTRLLLVWQIGVMPVLVTEYSVSDEVNSTGGVTIACGLGLAAYALVHLISID
TPRDNVGSALPTIRDIRPVSVHKLFRVISINASAVSHVSVPLGLFWAVITFLTYSYGTGG
HTDFCPALAATNNAGLIAFCTGSGPLIVLAVLLYVLPIFSLVSAIATVMATTGSMSNSHN
SANSAGFQNKAAIFYLLLTAVLSATAFIIAFTLA