Protein Info for BBR_RS15155 in Bifidobacterium breve UCC2003

Annotation: histidine triad nucleotide-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 112 PF11969: DcpS_C" amino acids 7 to 106 (100 residues), 90.9 bits, see alignment E=8e-30 PF01230: HIT" amino acids 15 to 109 (95 residues), 90.3 bits, see alignment E=1.1e-29

Best Hits

Swiss-Prot: 44% identical to YHIT_AQUAE: Uncharacterized HIT-like protein aq_141 (aq_141) from Aquifex aeolicus (strain VF5)

KEGG orthology group: K02503, Hit-like protein involved in cell-cycle regulation (inferred from 95% identity to bll:BLJ_0888)

Predicted SEED Role

"Bis(5'-nucleosyl)-tetraphosphatase (asymmetrical) (EC 3.6.1.17)" (EC 3.6.1.17)

KEGG Metabolic Maps

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.6.1.17

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (112 amino acids)

>BBR_RS15155 histidine triad nucleotide-binding protein (Bifidobacterium breve UCC2003)
MSESDDCLFCKIIAGQIPSSKVYEDETTYAFNDIDPKAKVHVLVVPKKHYANVAELAAAD
PAELAHIVSVAQGIADHEFHGAYRLVFNTGLDAGQTVFHVHAHVMTGEKLDE