Protein Info for BBR_RS15075 in Bifidobacterium breve UCC2003

Annotation: peptidase A24

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 signal peptide" amino acids 1 to 18 (18 residues), see Phobius details transmembrane" amino acids 27 to 46 (20 residues), see Phobius details amino acids 53 to 76 (24 residues), see Phobius details amino acids 96 to 120 (25 residues), see Phobius details amino acids 137 to 156 (20 residues), see Phobius details

Best Hits

KEGG orthology group: K02654, leader peptidase (prepilin peptidase) / N-methyltransferase [EC: 2.1.1.- 3.4.23.43] (inferred from 88% identity to bln:Blon_1599)

Predicted SEED Role

No annotation

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 2.1.1.-

Use Curated BLAST to search for 2.1.1.- or 3.4.23.43

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>BBR_RS15075 peptidase A24 (Bifidobacterium breve UCC2003)
MPYLFTLPGLLCGLALSIEDVRCRRVPIAWVAVGALLQLAADFAYGVVANDLFVLLQALL
FTVLCCLVQFALALIVPKSLGFGDVTALVPMGLSVGLFGLLPVVVWWLAMGMCGIAWIAW
WTRFDPQRKSPAYAGKVPYAPVILVGAAVAIVVGVVL