Protein Info for BBR_RS14740 in Bifidobacterium breve UCC2003

Annotation: YccF domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 121 transmembrane" amino acids 6 to 36 (31 residues), see Phobius details amino acids 56 to 77 (22 residues), see Phobius details amino acids 80 to 101 (22 residues), see Phobius details PF03733: YccF" amino acids 4 to 54 (51 residues), 69 bits, see alignment E=2.2e-23 amino acids 66 to 115 (50 residues), 78.7 bits, see alignment E=2.1e-26

Best Hits

KEGG orthology group: None (inferred from 90% identity to bln:Blon_1682)

Predicted SEED Role

"POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (121 amino acids)

>BBR_RS14740 YccF domain-containing protein (Bifidobacterium breve UCC2003)
MRVLGNILWIILGGLAIAIGWALVGLILCISIIGIPLGIQAFKMAGLTLTPFGKTVQYGG
GVGSALANILWVVLVGWWMALGYLGAGVLNCITIIGIPFGLQSFKMAKLALWPFGAEIVN
L