Protein Info for BBR_RS14605 in Bifidobacterium breve UCC2003

Annotation: ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 850 912 transmembrane" amino acids 15 to 37 (23 residues), see Phobius details amino acids 289 to 314 (26 residues), see Phobius details amino acids 334 to 363 (30 residues), see Phobius details amino acids 381 to 403 (23 residues), see Phobius details amino acids 433 to 452 (20 residues), see Phobius details amino acids 472 to 495 (24 residues), see Phobius details amino acids 527 to 549 (23 residues), see Phobius details amino acids 781 to 809 (29 residues), see Phobius details amino acids 832 to 857 (26 residues), see Phobius details amino acids 875 to 895 (21 residues), see Phobius details PF12704: MacB_PCD" amino acids 21 to 245 (225 residues), 42.9 bits, see alignment E=7.1e-15 PF02687: FtsX" amino acids 293 to 410 (118 residues), 62.9 bits, see alignment E=2.8e-21 amino acids 788 to 905 (118 residues), 75.8 bits, see alignment E=2.9e-25

Best Hits

KEGG orthology group: K02004, (no description) (inferred from 82% identity to blf:BLIF_0717)

Predicted SEED Role

"putative ABC transporter permease protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (912 amino acids)

>BBR_RS14605 ABC transporter permease (Bifidobacterium breve UCC2003)
MFSITVKLMKKSARMLIPAGIAILIGTAFIAATFLFGNAMNDSLARQTTAQLGGANYVIS
ANASDGLSEQEQNDIYARTVNDFQLDRIRATEGVKDVRVESSSSVTVANGDKHASSYAIT
TAAQRDLLPVSIIQGDQPVDSNEIALTKSVADQLGVKVGDSVTVNSRTAQAVASTGYGSA
GNDTAADSGMTVRVVGITEDPNGAYAYYGGASVLSDNVITAMNGIDDFGKLNVYLVYLDI
DDADQPSADATVKQIDKLLPKHFTVQSRAAMEEESIKSVSKGDTSITTIFLLSFGILAML
VAALVIANTFQVLVAQRRRTLALLRTIGANKGQLYVSVLFEAGLLGLIASMLGVGLGIGL
MAALCQSGLMKATGMTMRLVLSWPAFVVPIAFGIAMTVIASLGSARSATAVTPLEALRPI
ELNDTRRAGKIRAILAGLLVLVGIGLAAFSAWQMNEKIAGHDSLADKQYPMVLLAAIAGC
ALIFLGLVLSATFWLPVLMRGVGALVAFAGPSAKVAHANIQKNPRRVAATGAALLIGVTL
VSTIATGAASAKQTMNEALTTRYSVDMIAAGADMTSKQADEAAKIKGIKDSIYAPTRMMS
MKDANGKDLNVLIVGVDGVDALRKVVRADLSGVTISGDSVLMPKYSAATGKDIPLGKSVT
FTSDVSGSQTGTADAAASDTENDGGQSDGVQTLTLAPQKVDYRRISANYAAVAFVDAGHF
TNGDVKANGHIMLMRIDAESAGTTLNDVFTNVQNAFSASADIDVSGPVAERTQWETMING
MMALLVGLIAVAVLIALVGVANTLSLSVIERTRESATLRAIGMTRGQLRCSLAVEALLLS
LVSGVVGVVLGTLFGWLGSYMVFSLYGDTVFPFEWATNGAVLGVAALAALLASVAPARRA
VKTPPVEALAEA