Protein Info for BBR_RS14260 in Bifidobacterium breve UCC2003

Annotation: ABC transporter ATP-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 PF00005: ABC_tran" amino acids 27 to 169 (143 residues), 98.7 bits, see alignment E=2.4e-32

Best Hits

KEGG orthology group: K02074, zinc/manganese transport system ATP-binding protein (inferred from 92% identity to blf:BLIF_0641)

Predicted SEED Role

"Zinc ABC transporter, ATP-binding protein ZnuC" in subsystem Transport of Zinc

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (290 amino acids)

>BBR_RS14260 ABC transporter ATP-binding protein (Bifidobacterium breve UCC2003)
MNESSACIVFTDAAIKRGDRTIWQHGNFTIPTGSVTAIVGTNGTGKTTMMKAELGLLPLS
HGSLTVLGKPAGEMNKRIGYVPQSYVSDVDSNLTAEQSVLLGLTGTRFGIHPVTKAQKAK
AHEAMEFTGIADKAHYRLSELSGGLRQRVAIAQALVCDPQLLMLDEPLANLDLASQRSTV
HVLAKLNRELGMTIQVVAHDLNMLLPILTGAVYLLDGHPHYADMHKVLDSDLLTHLYGTQ
VQVVTTPQGDMFVTPTPDEPRDQPQDMHTAAEVAQLHHHEHGTDTATAHQ