Protein Info for BBR_RS14185 in Bifidobacterium breve UCC2003

Annotation: cell division protein FtsK

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 572 transmembrane" amino acids 25 to 49 (25 residues), see Phobius details PF01580: FtsK_SpoIIIE" amino acids 105 to 239 (135 residues), 85.5 bits, see alignment E=1.7e-27

Best Hits

Predicted SEED Role

"Cell division protein FtsK" in subsystem Bacterial Cell Division or Bacterial Cytoskeleton or Bacterial RNA-metabolizing Zn-dependent hydrolases

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (572 amino acids)

>BBR_RS14185 cell division protein FtsK (Bifidobacterium breve UCC2003)
MVLAAAAPIVAQIMMLAMMTLHGQWMFALVMVPGIVGGLASMLVTLPLPYVEPSQSPVES
TETHHAPRDPSPDAADMFCASDAPSIESLLTFDRLGWRTIVRNWLEPSDYDVPLGVTASG
PFMLNLHRQGPHALVAGTTGSGKSVLLQSWCLALAAMNGPDQLNFVFLDFKGGAAFRKLE
QLPHTIGSVCDLDLAHAARALKALEAELTRREKLSADLHVSDIDDMRDAPPRLVVVIDEF
HALKDQLPDYMPRLVRIASLGRSLGMHLIACTQNPLGQVSTDMKANMAISICLRVRDGLQ
STELLGDSRAATISPALPGAAYCNDGEHVTAFRCAPADNIDVYCRQIAFAARFVGTRSRP
PLFTSPLPRSVQDHPVSGQVDRIRFGLSDNGITLTDAVVPLDCGNIAIIGPQGRGKTTLL
EVIARQVSAMDGLMLHISGLYRGQRLTTTEHRSRLSAASTRIAPAPPRLIWLVDDADDLL
DPLCCDTQAVRFRQALADSSIIVVFAVRSPRHIRVPDHCSTRIVFPCGDRTADLVAGIPS
SLVNTMSQEDLDTPGRAVLIAGASACLVQCAS