Protein Info for BBR_RS13840 in Bifidobacterium breve UCC2003

Annotation: DUF3043 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 transmembrane" amino acids 105 to 126 (22 residues), see Phobius details amino acids 132 to 154 (23 residues), see Phobius details PF11241: DUF3043" amino acids 28 to 199 (172 residues), 191.1 bits, see alignment E=8.4e-61

Best Hits

KEGG orthology group: None (inferred from 90% identity to blm:BLLJ_0551)

Predicted SEED Role

"CblZ, a non-orthologous displasment for Alpha-ribazole-5'-phosphate phosphatase" in subsystem Coenzyme B12 biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>BBR_RS13840 DUF3043 domain-containing protein (Bifidobacterium breve UCC2003)
MTWNPFKKQEEAQVPVEEAAKKAAPNEKKGRPTPKMKQAQAAGIRPLVPVDRKASAKAAK
ARLREKENAEYEAMQKGDINHMPKAERLPWRIYIRDYVDARFNLGEWFIPVAFAILIASM
LVTSLVQNQWVSIIMMLCMYGYLIAVIIDVWLMWRKLKAKLIAKYGESSVSKGSRSFSYA
WSRAIQMRRWRLPKPRYPKRGHWPAD