Protein Info for BBR_RS13730 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 576 PF10103: Zincin_2" amino acids 78 to 257 (180 residues), 108.6 bits, see alignment E=2.3e-35 amino acids 259 to 504 (246 residues), 208.1 bits, see alignment E=1.2e-65 TIGR03624: putative hydrolase" amino acids 317 to 504 (188 residues), 178.8 bits, see alignment E=9.6e-57

Best Hits

KEGG orthology group: None (inferred from 85% identity to blm:BLLJ_1353)

Predicted SEED Role

"Collagen alpha 1(I) chain precursor"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (576 amino acids)

>BBR_RS13730 hypothetical protein (Bifidobacterium breve UCC2003)
MDDNAIHEWLIKCFGPIQGEMAWQQISQLPEEIRAQMMSQDPSRLPDPAEVQQMMAAFSA
GGLNTMGDMQRTVEEGPINVKLAKSIALQQANASGSQPSVSAVDGEAARRAMSEANLWLD
TACEFDPAPGEPDVLTRAGWVEGTIDQWAKFAAPVAESMNDALASVISERLGGMLGNGEV
AGMFAGPVPIPIPDGMKDPGQLMKLLGNTSFAMQLGHAAGNLSHEVHGSFDQGISLLKNP
AGGLIAQNATEYAKSLNGEAPAEATDETSETTNPIGFTSAATSAGTIDNSDSSETSTTVE
SSDDANAADTAAFEEAFAGFDSNEKIPESEVLSFLALQEMAHARLYASVPWLMPRFEALI
GKYARGISIDLDAMEEQLRDATSMDPESISGAVNLTKVGIPDTPEQREALASLESLLAMV
EGWVDCVVWRAGMAHLPHIEQLREMMRRERAMGGPAERTFESLLGLQLRPKRMREAAGLW
EMITVAEGPDGRDAKWSHPDLLPALPGDKPADGVATESSDSSQSSVNAGSSTSHPAADGK
TDNIDWDAELSKLLGEDGNDGPDTQDQPDNPQQPNE