Protein Info for BBR_RS13115 in Bifidobacterium breve UCC2003

Annotation: Solute-binding protein of ABC transporter system for peptide

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 544 transmembrane" amino acids 33 to 55 (23 residues), see Phobius details PF00496: SBP_bac_5" amino acids 114 to 448 (335 residues), 260.1 bits, see alignment E=1.8e-81

Best Hits

KEGG orthology group: K02035, peptide/nickel transport system substrate-binding protein (inferred from 91% identity to blo:BL1161)

Predicted SEED Role

"solute binding protein of ABC transporter systemy for peptides"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (544 amino acids)

>BBR_RS13115 Solute-binding protein of ABC transporter system for peptide (Bifidobacterium breve UCC2003)
MSQDNGAHVEDGATTDASLASRAKNPKKNSPKWWLIALAVVVVVAVIAGAAFAFGGKKDS
KNAASSGTYADAVTIGLKLAPTNLDIRNTAGSALDQILIGNVYEGLVARDSKNQVVPAIA
SSWETSKDGLTYTFHLNKNMTFSNGDKLDAEDVAWSINELIAKDYHDADALAAVDKVEAK
DADTVVITLKSANSNLLWTLTGRPGLVFDKDAKYDLKTQAIGSGPYTVSKFVENSSITLK
ANDKYWGKNKAKTPTVVVKYLADDNAAVNALKSGDVQVLAPITENLAEPFKSDSANYTVK
AGDGTDKFVLGFNNASGSKLADKRIRQAIRYAINHKELIASRGGADKALGGPIPSLDPGY
EDLTNLYPYDQGKAKSLMAQAGYSADKPLELSLTYANIYGTELGDQLRSQLKPIGIDLKV
NVVEFSTWLQDVYTNHDFDISLVDHNESHDFASWTDPTYYFGYDNKDVTKLYNEGVAATS
DKERDAKFAEAAKLVSEDAAADWLFNYRTTTATAKGVKGFPLNLNQTVLPLYNVTYSVAG
SSQK