Protein Info for BBR_RS12640 in Bifidobacterium breve UCC2003

Annotation: glycosyl transferase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 346 transmembrane" amino acids 319 to 337 (19 residues), see Phobius details PF13641: Glyco_tranf_2_3" amino acids 20 to 219 (200 residues), 60.1 bits, see alignment E=4.4e-20 PF00535: Glycos_transf_2" amino acids 21 to 183 (163 residues), 128.2 bits, see alignment E=4.7e-41 PF10111: Glyco_tranf_2_2" amino acids 21 to 120 (100 residues), 42.1 bits, see alignment E=1.2e-14

Best Hits

KEGG orthology group: None (inferred from 98% identity to bad:BAD_1385)

Predicted SEED Role

"glycosyl transferase family 2"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (346 amino acids)

>BBR_RS12640 glycosyl transferase (Bifidobacterium breve UCC2003)
MSDNPSSFHEGATPEDFPLISVIVPVYKVERYLDRCVQSIVDQTYRNLEIILVDDGSPDS
CPDMCDAWIAKDYRIRVIHQENQGLGAARNSGIESSTGELIGFVDSDDWLEPTMYEALFN
SLKNNDADISMTASIMEYPDGRQICHYQPNVHLVMTTSESFKYVNLPGYSTISAWSKLIK
RSVLGDIRFPEGCVNGEDTRFTYEVFAASKRTTFDSVPLYHYRITEGSLSRTYTNYNWAG
YEATKQMVELVRRRFPEQLPFALYGLMRSMISLYDQALVTRSSKEQQWRRFAKDTQAFVR
RNIGLVAESVDLPRGRSMQLKLMAVSPVLYSVSFLIYKRIHPERSK