Protein Info for BBR_RS12395 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 208 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 35 to 54 (20 residues), see Phobius details amino acids 61 to 81 (21 residues), see Phobius details amino acids 94 to 117 (24 residues), see Phobius details amino acids 129 to 151 (23 residues), see Phobius details amino acids 172 to 197 (26 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 88% identity to blb:BBMN68_1049)

Predicted SEED Role

"Permeases of the major facilitator superfamily"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (208 amino acids)

>BBR_RS12395 hypothetical protein (Bifidobacterium breve UCC2003)
MRFIVTSWRLTIAGLCFVGTYEAWSKPQYWVYFTFQTGFVLGIVMLWAGAATLLKGIQPP
AWLKGCLTLYAIVTALVAFFLMPPDNPDYVPQVVGIMTNTMLHKIAPIMALIDFLLFDPH
RRFRWHYMFSWLMYFPAYLAFVLIRAAIWPGSGPAAGGSPYPYDFINLDKLGWQGFGISC
GRLALAFLVISLIVWVLDRALPNKALVA