Protein Info for BBR_RS12365 in Bifidobacterium breve UCC2003

Annotation: DUF177 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 206 PF02620: YceD" amino acids 65 to 197 (133 residues), 91.8 bits, see alignment E=1.7e-30

Best Hits

KEGG orthology group: K07040, uncharacterized protein (inferred from 89% identity to bln:Blon_0402)

Predicted SEED Role

"COG1399 protein, clustered with ribosomal protein L32p"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (206 amino acids)

>BBR_RS12365 DUF177 domain-containing protein (Bifidobacterium breve UCC2003)
MARVEDSLWAIPVAQIASRAGQSKEIDADFPAPSGIGDDIVGIKEGDPVHVTGSFDSIVD
GLIFTGRLVAPFVSECTRCLKPIDEDWPVNVTVFFPYESAADKGCGKSGSKNGKDEEVDI
IAGEDESEDTYPLLENGAFADIEAMIRDTLVESLPLQPLCKPDCKGLCSQCGIDLNENPD
HHHEMEDIRFAGLAGLKAQLEAEQGE