Protein Info for BBR_RS12300 in Bifidobacterium breve UCC2003

Annotation: 30S ribosomal protein S16

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 157 TIGR00002: ribosomal protein bS16" amino acids 4 to 79 (76 residues), 105 bits, see alignment E=7.8e-35 PF00886: Ribosomal_S16" amino acids 9 to 67 (59 residues), 89.2 bits, see alignment E=6.5e-30

Best Hits

Swiss-Prot: 94% identical to RS16_BIFLO: 30S ribosomal protein S16 (rpsP) from Bifidobacterium longum (strain NCC 2705)

KEGG orthology group: K02959, small subunit ribosomal protein S16 (inferred from 94% identity to blj:BLD_1052)

Predicted SEED Role

"SSU ribosomal protein S16p" in subsystem Ribosome SSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (157 amino acids)

>BBR_RS12300 30S ribosomal protein S16 (Bifidobacterium breve UCC2003)
MATKIRLKRQGKKFYAFYRVVVVDSRKKRDGKVIEEIGTYNPNTQPSTIQIKSDRAQYWL
GVGAQPSEPVFKLLNITGDWQKFKGLDGAEGTLKTVEAGPDAEARIAAVENQAQKLKAAK
SEADAKAKAEAEAAAAAEETPAEEAPAEAAEEAPAEA