Protein Info for BBR_RS12295 in Bifidobacterium breve UCC2003

Annotation: RNA-binding protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 77 PF13083: KhpA-B_KH" amino acids 4 to 69 (66 residues), 73.8 bits, see alignment E=4.2e-25

Best Hits

Swiss-Prot: 64% identical to Y1489_LEIXX: UPF0109 protein Lxx14890 (Lxx14890) from Leifsonia xyli subsp. xyli (strain CTCB07)

KEGG orthology group: K06960, (no description) (inferred from 92% identity to blc:Balac_0266)

Predicted SEED Role

"KH domain RNA binding protein YlqC"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (77 amino acids)

>BBR_RS12295 RNA-binding protein (Bifidobacterium breve UCC2003)
MLAQAVEHLIKNIVDFPDDVSVKSHENARGELLRVRVNPEDIGRVIGRSGRTANAIRTVV
QALSDHKVRVDIMDVRR