Protein Info for BBR_RS12155 in Bifidobacterium breve UCC2003

Annotation: sugar ABC transporter permease

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 303 transmembrane" amino acids 20 to 46 (27 residues), see Phobius details amino acids 84 to 105 (22 residues), see Phobius details amino acids 117 to 138 (22 residues), see Phobius details amino acids 166 to 189 (24 residues), see Phobius details amino acids 218 to 238 (21 residues), see Phobius details amino acids 274 to 296 (23 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 65% identity to bln:Blon_2204)

Predicted SEED Role

"ABC-type sugar transport systems, permease components"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (303 amino acids)

>BBR_RS12155 sugar ABC transporter permease (Bifidobacterium breve UCC2003)
MTHAADGDARMPLRKEKQQYVGMLYCLPYVVVFLMGTILPILYALYLSFFKERMVGGSRF
VGLKNFVRAVSDAKLWESFGRVSLYFLIQVPLMLALALLAALILDSGRIRHIAIPRMLLF
LPYAVPGVIAALMWGYIYGQRNGLIGQFFQMFGAQAPNLLSADAMLFSISNIARWCFMGY
NMLIFYASLRVIPGELYESARIDGASEFRIAWSVKIPMIRSTVIMTLLFSIIGSYQLFNE
PNILKTLVPEVINSYYTPNMYTYNLAFTGQDINYAAAVSLVVGSITMLIVAAVKLFGSRW
EER