Protein Info for BBR_RS12150 in Bifidobacterium breve UCC2003

Annotation: sugar-binding protein ABC transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 458 signal peptide" amino acids 1 to 25 (25 residues), see Phobius details PF01547: SBP_bac_1" amino acids 67 to 352 (286 residues), 106 bits, see alignment E=1.9e-34

Best Hits

KEGG orthology group: None (inferred from 44% identity to bln:Blon_0343)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (458 amino acids)

>BBR_RS12150 sugar-binding protein ABC transporter (Bifidobacterium breve UCC2003)
MNKGLYRAVCAVAAAALAFPLAACGSGGGDTGASGITADDVQAALDSDEDITLTVWTWAY
DIRKKSTDAFMKKYPHIKIDLVSTGTSSDHYTKFQNVVKAGSGIPDIVQTDYDSMPQYAA
TGSLANISEESIEKEFGSLYADAAWNAVHMGDGLYGIPSDQAPVAMYVRADILEEYGIDV
PTTWDEFEEAGKKLHEADPTKYMGVFDTSNAHFMDYFFRAAGVKTYSVDGTENVSFDMQN
DETKEVMERIQRMIDEGVIEATATGTDQFTRDFLDGRYATWIDGCWRGALIASNMPSLEG
KMTVELPPAYGDSSADLKTATIGGSMLAMTSACPKEKRAAAIAYMNWVSSDPDAIEAWQS
YGGSYFNAAKSFQTDSEQANITDDFFRGEKVKAVYFESASKINDDWDVLPFNSQYAQEFV
DTVVPELTEDGDLYNALGKWQSNLETYAEDQGFNVVDK