Protein Info for BBR_RS12070 in Bifidobacterium breve UCC2003

Annotation: endoribonuclease L-PSP

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 129 TIGR00004: reactive intermediate/imine deaminase" amino acids 6 to 128 (123 residues), 133.9 bits, see alignment E=1.7e-43 PF01042: Ribonuc_L-PSP" amino acids 11 to 128 (118 residues), 122.7 bits, see alignment E=4.5e-40

Best Hits

Swiss-Prot: 47% identical to Y854_PYRHO: RutC family protein PH0854 (PH0854) from Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

KEGG orthology group: K07567, TdcF protein (inferred from 98% identity to blj:BLD_1115)

Predicted SEED Role

"Bona fide RidA/YjgF/TdcF/RutC subgroup"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (129 amino acids)

>BBR_RS12070 endoribonuclease L-PSP (Bifidobacterium breve UCC2003)
MSEKMEAVATSEAPAALGAYSQAVKANGFVFVSGQLGIDPTTGELAGDTAGEQAAQALKN
IKHILDTAGTGIEHVCRATIYLKNVEDFKEVDARYAEVFIGSVKPARVAFGNNMIPKGAL
VEIDAIAVE