Protein Info for BBR_RS11830 in Bifidobacterium breve UCC2003

Annotation: holin

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 25 50 75 91 transmembrane" amino acids 34 to 57 (24 residues), see Phobius details amino acids 63 to 83 (21 residues), see Phobius details PF16938: Phage_holin_Dp1" amino acids 28 to 84 (57 residues), 62.7 bits, see alignment E=1.6e-21

Best Hits

KEGG orthology group: None (inferred from 72% identity to bln:Blon_1572)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (91 amino acids)

>BBR_RS11830 holin (Bifidobacterium breve UCC2003)
MTDENIEAQTGTMEAKPAGMPDWLLPYRVYDVLKWVALIVLPAMATLVQALGPVWGWAWA
DPAATTINVVALTIGVVIGASALKAKASKAE