Protein Info for BBR_RS11800 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 234 transmembrane" amino acids 15 to 34 (20 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 69 to 91 (23 residues), see Phobius details amino acids 104 to 123 (20 residues), see Phobius details amino acids 136 to 158 (23 residues), see Phobius details amino acids 171 to 194 (24 residues), see Phobius details amino acids 206 to 232 (27 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 70% identity to blb:BBMN68_1130)

Predicted SEED Role

"FIG00672110: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (234 amino acids)

>BBR_RS11800 hypothetical protein (Bifidobacterium breve UCC2003)
MTETTQDSWKHKVPSMLLAQVTAYVLLIAATVIPTPGATPIIPMIVVALVLAAFIASWPF
RGTMLDRVTTVVFGVISLVFVVVPFPSGGIAPQHIAADGKIPGWYSWALVVGLLLVVLVV
FSFGRQMARENRSHLIRSLSHAATSGVASIAVAGWCFLPDLGTMISRNTTVGAIAVIVLV
VLAAALVVASILWVRDSDPDPNASHPWIGIGLLPVMLMGVTIAATTLVIMPLVS