Protein Info for BBR_RS11620 in Bifidobacterium breve UCC2003

Annotation: Two-component sensor protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 388 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 44 to 62 (19 residues), see Phobius details amino acids 67 to 84 (18 residues), see Phobius details amino acids 89 to 121 (33 residues), see Phobius details amino acids 129 to 153 (25 residues), see Phobius details

Best Hits

KEGG orthology group: None (inferred from 90% identity to bln:Blon_0244)

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (388 amino acids)

>BBR_RS11620 Two-component sensor protein (Bifidobacterium breve UCC2003)
MNMAFTFPSKIIRHYVAHPCLSLLSLLGLSLALMEIIQIGPMPLLPAMLYGVLAVSFVLL
PVINDQTCWAIIVAGSAISISLTQDSPFVVSGMLIALGILAFSGTVSEWLIAMLICSCTY
IARSVMVGNFNVFVSVSVTVMFLASLLAGRLVALRQQAFIREEQRLKLQLQLQRLDYMKQ
KNRLAIQIHDSLTNNLSDISLMARIHIDDNIPDGDDWAIVLEHSQEAFTQVHDIIDILSS
EDKDAKSETTFMVELRNLLDERCSHLHALGYEGDATIEGFCIKTTQEEKEEVLSLIKEIC
NNIQRHSLPHNGSFELIVRLSPSSMEINEMNDITAGSSLAAFEQSGRGLSLHSKRIQELG
GELNYRSDDGLWVLYAKIPLSHMETTKT