Protein Info for BBR_RS11595 in Bifidobacterium breve UCC2003

Annotation: 50S ribosomal protein L9

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 148 TIGR00158: ribosomal protein bL9" amino acids 5 to 148 (144 residues), 116.2 bits, see alignment E=9.1e-38 PF01281: Ribosomal_L9_N" amino acids 5 to 49 (45 residues), 74 bits, see alignment E=5.5e-25 PF03948: Ribosomal_L9_C" amino acids 66 to 147 (82 residues), 68.5 bits, see alignment E=5.7e-23

Best Hits

Swiss-Prot: 94% identical to RL9_BIFLD: 50S ribosomal protein L9 (rplI) from Bifidobacterium longum (strain DJO10A)

KEGG orthology group: K02939, large subunit ribosomal protein L9 (inferred from 94% identity to bln:Blon_0237)

Predicted SEED Role

"LSU ribosomal protein L9p" in subsystem CBSS-262719.3.peg.410 or Ribosome LSU bacterial

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (148 amino acids)

>BBR_RS11595 50S ribosomal protein L9 (Bifidobacterium breve UCC2003)
MAETKVILTQTVANLGHSGDVVDVKSGYARNYLFPQGLAFAWTKGAEAQIAAMKRARLAK
AVATREEAIAAKDAIEGTTVEIAAKVSESGKLFGGISNEAIAIALSDKAPVNPKSIEVET
IKTTGDFPAKVALHPEITASFFVKVVAE