Protein Info for BBR_RS11485 in Bifidobacterium breve UCC2003

Annotation: serine hydrolase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 563 transmembrane" amino acids 21 to 40 (20 residues), see Phobius details PF13354: Beta-lactamase2" amino acids 362 to 544 (183 residues), 102 bits, see alignment E=1.7e-33

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (563 amino acids)

>BBR_RS11485 serine hydrolase (Bifidobacterium breve UCC2003)
MPQRHHGKVKILKGSVYTRRRIVVGCLGVLLLVELFQLFWPSDKFFPLATLDGHAVGGQS
SQQAAETLNAATLKRTVKLTDKTTGTTVSLTAKQAGITVDYTDRAKAAAKHSVVKRIVPF
SWLFVHSTTSDSLPDALGTSDKQAHEDMRNASVQGTKGELKIVSAAPGYTFTPADIRSAA
GSSFSSSATGDLAAATIEMGIVSPTVSDDTAKQLLDTLNKALSKDVAFTYEDGTWTVPAK
KIINTVSTTVNAQDDTKLDVTISESKLMRQLKSKGIALKVAKKAAGAGVAPATIAVKGNS
YQVIDASATAASLSGMLASGQNASVAISTKDFSNVELYEGLPASGTIEEKLQQLFGDADY
EVAVYDLKTGKSKIQIDADTAMTSASTYKLFIAYSMIHAVETGQVTWDSALNGMTLSSCM
ATMIINSDNSCPEAWLARYGFSTVTQQAHDIGAANTNFVPYGMTTTANDLATVLKGFYSN
SIASPDSTDQLFSLMETQVYREGIPAGIGSDGVVQDKVGFMDGLLHDAAIVRSDKGDYAM
VIMTDGSSWNKIAQASLLIYESL