Protein Info for BBR_RS11390 in Bifidobacterium breve UCC2003

Annotation: TnpY-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 723 PF13481: AAA_25" amino acids 415 to 592 (178 residues), 131 bits, see alignment E=4.5e-42 PF03796: DnaB_C" amino acids 436 to 591 (156 residues), 27.9 bits, see alignment E=1.5e-10

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (723 amino acids)

>BBR_RS11390 TnpY-like protein (Bifidobacterium breve UCC2003)
METSYEQVLEAVRRYPRDLKLQELPRDTSGRQHAQCSCPAHDGDGGTSLHITYDQSDGKT
MLHCFGAEHCDAAAIADALGLKIIDLFDQQSGPQGHAGYSSYNSYSCDSRLTAADLASIR
HANAPLLNRNETTTITPTHTENSAEIRQQYAMPKPYLEPLVLGQSPMFAAICAAIAVQPN
IGLLHGTCPNCGTADSLTVLYSPLESATLLRCSTRQADDVLNALNAPATLARSNGYEAMI
YDSERGTAYEYADGLIVRRSPAKRISQSGNTADKHPLWMAADAKRAVALGKPVYLTEGEK
DAGTLRALDYAAVTAAGGGGNFATKLDLDSARLALSGADVVAIVDKDDTGARWKEQVAQT
LTPFVRSLTFIQAAGEAHDASDAAMSGVEFEILPRESIQHESELEPELMSRAYSLTRLAD
VEPERPLWLWPGHIPKGKIVLIDGDPATGKSTLALDIAAHVTTGAAWPDGSAGCEPANVL
LLTAEDGLADTVSPRIRAAQGDTSKMFALSEVFKDGKEVAITLTDALPQIAQAVREQHIG
LIVVDVLISFLGSDTNSYKDQDIRAQVMAPLKRLCEETGCTVIALRHLNKGQGAAIYRGG
GSIGIIGAARAAFLVAKDPENEERRLFAPVKFNLGPMPRAMAYRLEDNPLLGCAHVHWLG
ETDDTAESHNQSAYGPSEREDSDVRTFIQDYFDHNKELTPDGLYWGVPSYRVINEAKGEF
SKQ