Protein Info for BBR_RS11325 in Bifidobacterium breve UCC2003

Annotation: polyketide biosynthesis protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 844 PF00109: ketoacyl-synt" amino acids 7 to 278 (272 residues), 110 bits, see alignment E=1.6e-35 amino acids 599 to 673 (75 residues), 24 bits, see alignment E=2.7e-09 PF02801: Ketoacyl-synt_C" amino acids 289 to 402 (114 residues), 98 bits, see alignment E=3.9e-32

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (844 amino acids)

>BBR_RS11325 polyketide biosynthesis protein (Bifidobacterium breve UCC2003)
MRMMDFEPIAIIGRGCILPPHSCSPEELWDAIVEGRSGIHPPMPERWGTRVDYVDPDRNA
VDRTYCGIGGFVTDYDQDERAASSERMRLNRTQRMIVDSASQAIGEAGIDRSERARCRLF
VGNMLADEAFGDQSLSEISGDVLDECVNEFGADARDAARRAIDDVILSRNDASETANAPS
DLARIPAEVLGMPDDPIVIDGACASGLLIVDLAARYLHTRAKPLAMAVGAMANMSITGNV
SFAKIGGLSDKPARPLDANANGLVPAEGAAAVLLCTLSYARLHGYPISGVIIGSYTTSDG
HGKAIYAPNPEGQRCAMRGALAQAGIDPDGIDYIETHATGTPAGDNSELTAIIGMLSERR
NGPVSIGSIKNLIGHGFPTAGTSNLLSVLESFRHERYLPTHGVTTPHPLIAKHPELLQLH
DAPDPWPEPGNRPRRALINAFGFGGINSSVIVEQYDDGRPDGPAHADAEPRDATYLAVQC
VAQANCEVPRTLLEDPMTADWRVFHTPPVLLPHMDIAQRLAVLAAGNLQPMMAEPDRKET
IGAFLGQPSGLAVGARRELRIRLPEILDAITHAEIPDERRRELRRWFADRVTTSIGATVE
AALPGYMDNIVSGRIANMFDYRGPNCVIDGGRFSFARSIEMASLVLAEHEADGMIVGSSF
ANPSHLVDQEAARLATATLIMLRPLDWAEAHREQVRAVIRISHADRPGTEPQTLLDAARL
AQAVTGHASRMPRLQAGGMLVEVMDPDAMPSERIGHRPDGLRADPGTDAGHGPSDGVTVH
DTWIGVRGATIPDCLDTLLDGTEPVQPDGQATPIRIIIPFDSPAEKENTMRELRILKDAL
RHHR