Protein Info for BBR_RS11315 in Bifidobacterium breve UCC2003

Annotation: MFS transporter

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 522 signal peptide" amino acids 1 to 47 (47 residues), see Phobius details transmembrane" amino acids 62 to 80 (19 residues), see Phobius details amino acids 92 to 114 (23 residues), see Phobius details amino acids 120 to 142 (23 residues), see Phobius details amino acids 150 to 171 (22 residues), see Phobius details amino acids 181 to 201 (21 residues), see Phobius details amino acids 213 to 232 (20 residues), see Phobius details amino acids 238 to 261 (24 residues), see Phobius details amino acids 281 to 305 (25 residues), see Phobius details amino acids 312 to 334 (23 residues), see Phobius details amino acids 343 to 364 (22 residues), see Phobius details amino acids 370 to 388 (19 residues), see Phobius details amino acids 492 to 512 (21 residues), see Phobius details PF07690: MFS_1" amino acids 30 to 423 (394 residues), 178 bits, see alignment E=2.6e-56 PF00083: Sugar_tr" amino acids 40 to 205 (166 residues), 30.4 bits, see alignment E=1.9e-11

Best Hits

KEGG orthology group: None (inferred from 99% identity to bll:BLJ_0181)

Predicted SEED Role

"putative transporter"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (522 amino acids)

>BBR_RS11315 MFS transporter (Bifidobacterium breve UCC2003)
MQSERSLIPTPMPVRRHARSGNRGLVLTALCLAVLLVVMDNTIVNVAIPTMSDALNASST
DLQWVVDAYTLSFAALLLPAGKLSDRWGRRRMLLVGLAGFAVVSAATAFSWALWQLVTLR
VVLGVCAALIYPATLSSIIVIFEGSRYRSLAVGLWAATSGVGIALGPIIGGVLLEHYAWN
SIFWVCSVIGVVALACIAVAVPEVRAYRSERFDFPGTVLSVAGVGLLVWGIIERPTYGWL
SWQVIGGICAALIILAVFAAVEGHTHAPLIDVGLFRRATFTSSTCAICVAFFCLFGFIFI
TTQWFQALRGYTALQTAVATLPFAVVMAAVAPFATQLAKRFGYRSVVSTGLLFLSASMFV
VTRVDAHCSYWFVVVPTMALMAAGIALIQGPATDALMSTVPESSTGAASAVNDTIREIGG
TLGVAVMGSAISSVYPDELSDSLSGLQIPSSIAKAAEDSVMAAKSILPHLPAGIRQTVEQ
SVSTSFMSATHAACWIACALALAFALLCWITLPKHDSGNLPQ