Protein Info for BBR_RS11265 in Bifidobacterium breve UCC2003

Annotation: DUF805 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 449 transmembrane" amino acids 159 to 177 (19 residues), see Phobius details amino acids 183 to 204 (22 residues), see Phobius details amino acids 215 to 243 (29 residues), see Phobius details amino acids 258 to 284 (27 residues), see Phobius details PF05656: DUF805" amino acids 147 to 298 (152 residues), 82 bits, see alignment E=2e-27

Best Hits

KEGG orthology group: None (inferred from 51% identity to blf:BLIF_0153)

Predicted SEED Role

"Integral membrane protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (449 amino acids)

>BBR_RS11265 DUF805 domain-containing protein (Bifidobacterium breve UCC2003)
MTDPNNGAPAPQYPASNGTPDTNNPAEPNTVAPQYGAPAPAYGQLSGNPYGQPAYGQEQP
TQPNPAYSQPYGQPAGAQSAPAYGQPAYGQPNGNPYGQPDGAYGQVPPTYNAYPAPAAAT
DTNAVPLNKPYYGCSFQEAFLRFWKKYVVFKGRASRSEFWWWMLASFAIQVVLANLVDVS
NDHLSFLSSLWSLSILVPSIALSVRRLHDINKSGWWLAIFYGAVFAGAILMIVGGGAALF
GALSVWGSPSDSGYYATAAAGSLGILFIGAIIAAAAGIVYIVFMTLPSKPEGARFDDDFA
AAVPYGAPVPPAGAPNGYAQAAPGYGDPNAAPYGQAAPTAPAYNPYAQQTARPVPGHDPY
AQSTAPAAPTAYGQPAPTAPDYSQPATPATYTQPTAAQTPDYGQPAAPASNYGQPATPAP
TAEPAVAPDDSTIPASDNEDDGQKPWQGQ