Protein Info for BBR_RS11220 in Bifidobacterium breve UCC2003

Annotation: YbhB/YbcL family Raf kinase inhibitor-like protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 184 PF01161: PBP" amino acids 25 to 167 (143 residues), 64.1 bits, see alignment E=8.9e-22 TIGR00481: Raf kinase inhibitor-like protein, YbhB/YbcL family" amino acids 26 to 168 (143 residues), 75.2 bits, see alignment E=2.3e-25

Best Hits

KEGG orthology group: K06910, (no description) (inferred from 96% identity to blm:BLLJ_0155)

Predicted SEED Role

"Phospholipid-binding protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (184 amino acids)

>BBR_RS11220 YbhB/YbcL family Raf kinase inhibitor-like protein (Bifidobacterium breve UCC2003)
MKISADFTVIPDDFAKAAAPEYCNGGVPVVSFPFYIDDVNPEARYLHWEFVDPDSIPVCG
FEWIHWSVANLPIGALMYDFNDSHALAIPPDFSRQLPAMIPETVQGRNSSASKFLGRSTD
PSVIMRYNGPQPPDKDHEYYLQVWATKKPLSGLNQGFWLNELLHALRASGETPDTDGIFL
TGKA