Protein Info for BBR_RS10895 in Bifidobacterium breve UCC2003

Annotation: type I pullulanase

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1500 1600 1708 signal peptide" amino acids 1 to 35 (35 residues), see Phobius details transmembrane" amino acids 1670 to 1690 (21 residues), see Phobius details PF00128: Alpha-amylase" amino acids 104 to 363 (260 residues), 72.1 bits, see alignment E=1.6e-23 amino acids 1124 to 1217 (94 residues), 34.8 bits, see alignment 3.7e-12 PF02806: Alpha-amylase_C" amino acids 423 to 498 (76 residues), 40.9 bits, see alignment (E = 5.2e-14) PF03714: PUD" amino acids 634 to 723 (90 residues), 43 bits, see alignment 1.9e-14 amino acids 747 to 856 (110 residues), 48.7 bits, see alignment 3.2e-16 TIGR02104: pullulanase, type I" amino acids 949 to 1564 (616 residues), 723.7 bits, see alignment E=6.7e-222 PF02922: CBM_48" amino acids 960 to 1043 (84 residues), 47.9 bits, see alignment 3.4e-16 PF21653: pulA_all-beta" amino acids 1508 to 1561 (54 residues), 29.2 bits, see alignment (E = 1.3e-10)

Best Hits

Predicted SEED Role

"Pullulanase (EC 3.2.1.41)" in subsystem Maltose and Maltodextrin Utilization (EC 3.2.1.41)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 3.2.1.41

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1708 amino acids)

>BBR_RS10895 type I pullulanase (Bifidobacterium breve UCC2003)
MAVRRFSSLAKRLAVTGIAVAMSATTLVALPASADETEANAQARTSVGAPGDVIAIAFQT
NWNSVAKECTEAYGPEGVGYVQVSPPMESIQGTEWWTSYQPVSYKLDSKLGTEAEFKTMI
ATCNAAGVEIIADSVINHTTGADQGEGTGVAGSKYDGEGNFPAIPYTKENFHDCTKNIGD
YTNADEVQNCRLTSLQDLDTSQEYVQDKLADYMNRLLDLGVYGFRVDAVKHIATADVAAI
KAKLAEKSGRNADDIFFEQEVIGNASEAAEIQPSNYVANGKVSEFNFTNHLSVAFAGDIT
DASKGLAKVGGDGWVSSDKAAVWVTNWDTERGSSITYKKGSKYLLANAFMLAYDYGQPHI
YSGYYFDNSDDGAPGATETSVPDMECPTDGSMTSGTWQCAERWTAIRGMIGFHNAVNGTD
VTNWKAYDTNVLGFGRGDVGYLALNNSADDSKQTFQTSLPAGEYCNVYATGDCSATVTVK
DDGTFDATLAKNSAIAIYAGATKDSWTGTTKSDPSDPDLSVNDETKKAAADTSRTIYYKL
PDGWKQAYLHYGIDGWAEQGHELMADAGNGWVKFTVDPKGKSFEYVFTDGGDNWDNPNGG
GNYTAQGHWTAVADHEASAGVPSDVQSYQPKTKVIVHYKPAEGDAVADRGVYMWGTDKNG
ATLNGAWHAFTGEDSYGKVFETTIDGAYDAAKIGVIVTTEGWDKVGGDRTIDGSTGTAEI
WVDGANPDETLTEAPDGYKKAANQIDVTIHYHRLADDYTSEDGMKAWDIWGWADGVNGAA
YPFTEHDDYGLIAKYTLKGSGMSTPQFIVRYGGDSWEAKDPNDENRTIPQSAITVNADGT
ASAEIWLVQGDTTIYTNGTLYDAKGMIVSAEMTDFNTITVKLNKALTIDKPADAVSVEGV
KIKDVKASGNTVTITTADNLDVTKAYKVTIEDYGTQNVSLGAVVRSDAFDKKYAYDGDDL
GVTYKAEKSTFKLWAPTATKVTLRLYADSTDPKAAQTDAVTLEKSGKKGVWTFAVDKDLK
DYAYDYELTFADGTVNTSADPYATAAVANGERSVVLSDKEKGDAGKRMASFSKPTDAIIT
EANVRDMTINPNSGVSEANRGKYLGFVEEGTTVDGKQGAASTGIDYLKSLGVTHVQIMPV
YDYGSVDETGDLSYGAQYNWGYDPENYNVPEGSYSSDPSDPSARVKEMKQMVSGLHKNGL
YVVMDVVYNHVYNASEHAFNKTVPGYYFRYDANGNLTNGSGCGNDVASERAMARKYIVDS
VKYWATEYNVDGFRFDLMGLIDQTTMNQVRAALDEIDPSILVIGEGWDMTDAIGNQETTQ
PNASKVKGVAFFNDSLRDAIKGSVFSDEDTGFIAGKADKENLIATNVLGCNNKREGIDEN
GHCNNGTADTNYGGADQVVQYVEIHDNLTLYDKLVKSAPNDSEETRLARAKLADSLILLS
QGIADMQFGQEFLRTKGGNGNSYNAGDAVNAIDWNRTVEQAGSVNYVKGLIALRKSIKNL
HLSSYDDIAKNMTVLQQSDGVVAYQLKDGGDTYVVVFNANESAATVEAVPAGKYTVLAAD
GKVTETQDKNAATTVGADGYQAGALAAAVLKAGADDDSTKPDGGKDDSSKPGNNDGKDDN
QSGGTATPGTPGDSGNGNGQTGDGNASNGASDTAAGQSQQFGAAALPNTGVALSVMAVAV
LVMTAAGMLLQRFSKGSNVVNSKEGSEQ