Protein Info for BBR_RS10845 in Bifidobacterium breve UCC2003

Annotation: choice-of-anchor A family protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1100 1200 1300 1400 1468 transmembrane" amino acids 1436 to 1457 (22 residues), see Phobius details TIGR04215: choice-of-anchor A domain" amino acids 41 to 386 (346 residues), 32.2 bits, see alignment E=4.7e-12 PF17802: SpaA" amino acids 491 to 565 (75 residues), 29.5 bits, see alignment 3.2e-11 amino acids 1009 to 1049 (41 residues), 45.2 bits, see alignment (E = 4e-16) amino acids 1132 to 1191 (60 residues), 47.9 bits, see alignment (E = 5.7e-17)

Best Hits

Predicted SEED Role

No annotation

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1468 amino acids)

>BBR_RS10845 choice-of-anchor A family protein (Bifidobacterium breve UCC2003)
MGTEANPATERDSGVATWVGGDMYVGKKSDNLTNADGPDASYSAEAEGLTVVNGKLMLHP
QKNSWNGQGFRFGVAGFGTQYRPAEGSTALVVGGNTVTVMDSATSTADVKAWNKPGFIDG
HSHVGSLSGSQSDVWGRDGTSSIGSYNGASVNWQKDKSGNTQNQDAGNLTKVSVKATDGG
AATDKDFSKDTFYQGYVVDDIVSPLAKQNNTGTVSSSISTLSELPRHKYNYYKEGTNAAS
GISYTFKYDDTTKYGTGRGIAPTTSYTNREKLITFTGTNNASMEVFNLDASMLSDTDENG
TLYRGVGFAFTNIADTASVVINVTGNASSISFHNGWQFWWNGAEISDGYSNYNNTDELKK
KSAAYDKAAQKILWNFSNTDNLTIYGGVANEDGTNTNADKITQDDAAAAMMGSIIVRGNF
ESHVSTNGRVYTGGDFSMYNPYKAGTFNQAGANDGDSASVLDMDQERHNFPWNGSYTESC
SAIAWQKADESGTLLGGTTWAVYGKYDDAASGKNALLTVQDNAFYDKDSADGRFTVEGLK
PNATYYIKEVSAGNDYQLNTNVYYVATGDSSATPVNVTQSVTKTDGAYTYGSADMTDGKI
VNKKNGHEVSWSKVDADTNKELAGSEWQIQQVKDGAATKSWNVTDNTSKATGVTVNPTSA
TLDSTNGWKTDLTAAVDPKDALQEVAWTFTDKDGNAVDSSTVAVLTRTGNLKTTVTGISS
IDTTVYVKACSVSNPEVCSALVTIKVKAMSVKDFTVKDSSNRTVENNSTITAAAVDSTLT
FTASSTPAVPITWESSNKSVATVTSSGENGQKATVTMTGFGFAVITAKAGDKKVSFTVKV
PSTTVYFKKSLMNWSKYYVYYNAGNNNWKFVEMSQSCGDYVYAILPKQSPGTEFLFHGDD
ENTSTNKWYQGSNKSDFKFTGNEVQVVNLYNDSQVSTAPAGCPASAAAAAQSNDAAVLNE
NATPADDPQPSDADGVAENAIDDGAKAISCTAADGENGRPGVKCDMDTAAGKFKVGGLDA
GTYWLHETTAPDGYTINKTLYQFTIDANGNVTWNGGWASGEATGAIDEKLKPGDNNAISD
TPTEVIWNKVDTKGGKLAGSQWKIVGPSPATDVYCVADNVTVDANGATTPAGIEFTGCTG
EKLSDAANTADEAGVITVRGLPVGTYTLTETKAPDGYVATTTVYTLTISDTEASTVVAQT
ATDRPTTRSGGNREAAANVPNASAPVNIQIPVKKSVKYTSWPKDSNGNYVNFNFKIEATK
STVDANPAAPMPAECSSSDATKNDCTISLAPKSDADDLSNVIAKFGKMTFTDVNLAAAAG
DASDYAKTYTYKITEIVPDSADAVENLRYSKAEYQVVVTLKQAKDSSGKLSGLSVSATMT
RIKDDSGNAEAGGGKIIGTWSSTSTGSSAGTAVEATFVNTKVLTGLPATGADWTGRLVLL
VGDGFILVGVLIAGGYQLAKRRREEDSD