Protein Info for BBR_RS10765 in Bifidobacterium breve UCC2003

Annotation: hypothetical protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 354 transmembrane" amino acids 63 to 86 (24 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 133 to 154 (22 residues), see Phobius details amino acids 169 to 194 (26 residues), see Phobius details PF02537: CRCB" amino acids 71 to 187 (117 residues), 62.3 bits, see alignment E=2.5e-21

Best Hits

KEGG orthology group: K06199, CrcB protein (inferred from 94% identity to blm:BLLJ_0097)

Predicted SEED Role

"FIG00423915: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (354 amino acids)

>BBR_RS10765 hypothetical protein (Bifidobacterium breve UCC2003)
MESQEQSPGDVVTAGEDSHPITQAIDAVEVTHAGATAPAANTMDPPTIPLAPMKRMQARF
NPLADGLMYVVVFVGGFVGVGCRHALDMLLPSVSGTPFVVGTFVSNMVACFLFAMLTEFM
ATASWLRRRVRQVVSRGVGLGLLGGLSTMSGVMLETMEGLHERHIASALGYLAGNFAGGL
LTAAAGVVLMQALLSRSTRKRVRGAFSAVSVSGSAESDTQGVRHVKVADVARSAAQAAME
AAQAAQQAAQTAQQIAQTGQVPRVETPTVPPTAIQPMQTGHVPQIPPLVVPQLAQSSQPL
LREPDTPDLGQLPEPIQQSQPIQQPANPLPPSFEPKPITAEISLVADPATGEVR