Protein Info for BBR_RS10690 in Bifidobacterium breve UCC2003

Annotation: DUF3427 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 100 200 300 400 500 600 700 800 900 1000 1068 PF13091: PLDc_2" amino acids 104 to 213 (110 residues), 27.9 bits, see alignment E=5.5e-10 PF04851: ResIII" amino acids 252 to 404 (153 residues), 124.6 bits, see alignment E=1.2e-39 PF00270: DEAD" amino acids 256 to 404 (149 residues), 33.1 bits, see alignment E=1.4e-11 PF18766: SWI2_SNF2" amino acids 265 to 448 (184 residues), 30.6 bits, see alignment E=7.9e-11 PF00271: Helicase_C" amino acids 504 to 607 (104 residues), 36.6 bits, see alignment E=1.4e-12 PF11907: DUF3427" amino acids 762 to 1066 (305 residues), 190.7 bits, see alignment E=1e-59

Best Hits

KEGG orthology group: None (inferred from 99% identity to bll:BLJ_0072)

Predicted SEED Role

"DNA/RNA helicase of DEAD/DEAH box family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (1068 amino acids)

>BBR_RS10690 DUF3427 domain-containing protein (Bifidobacterium breve UCC2003)
MSINLVSTSDSPANTQHHDSDPTPSILEDVISGLIEPRSDAPGEYKPTLIANRPGGLTMR
EEIGNSLATSDSFDISVAFVSAEAVLSLFEDFRSHHETATRAGTLITSTKNHFNDPRAFW
ELLHLQNTTGVDVRVWEGSRNTSVSAMAQGQPFHPKGYIFSRRMKDGTPYYDLYVGSSNL
TGAALTTQREWNLKVSSLADGELVGQFQDEIDSQVADSVPLTEEWIKQYEEDFKKYAPPR
HEILQSLEGHDIQPNAMQQEALANLKKIREQGEHRAIIVSATGTGKTHLSAFDVRECQPK
RMLYIAQQQMILQTAMKSYQKVLGCDESELGLYSGTSKQQDRRYVFATVQTMRQPEVLAQ
FKSDEFDYVLVDEVHHAGAEGYQRVINHFKDADFMLGMTATPERTDGINIFELFGHNIAY
EIRLQKALDENMLCPFHYYGVAEYLGSNDDPNGIAHRLDVSKGLDEKDSKQLKYEIEQLA
TEKRVRYIIDKLQEYGQFNIPVTGLVFCSRQEEAHKLSQLFNQQWNQQAERPYRTAAVTS
TDDDGRPVSQTQRDEYVRKLIEGELDYLFTVDMFNEGVDIPAVNQIVMLRSTESSIIFTQ
QLGRGLRKFPHKESVVVIDFIGNYNNNYLIPVALYGNTGDRDRARKNLQRKSIGLSSISF
DPIAKERILKSLDTADWSDMKKLSEQYRQVRYELGRIPMLTDIYNYDPSLPYTIASKRSN
YLDFVRSREKSLGKGKHHEATFEDQLEPVTDVEDAILKMAAELLLPGLRPHELVILAQLC
HFVSERLDDDVPQHWSAGSPIGRSELLDAIRTEFPQSDGSDTQFDSAISVLDYSYFTGPN
CNRFGNQPLVEAANSTGTENGTAYRLNSRFADMLATNRTFRIFFADTLRTGMANCRDIFR
EAAARQQVFDHMFLYERKYSMADVMRLCGWKKENTPQNVGGYLLDKETNTMPIFVKYAAS
QYEDEFLSTQEMKYFSKNGRTPQSPEFRWALNGIGPNWGQTHFVPLFVMRKAEETEGKYY
YVGHVAAFDNPQLTTKPDASGQGSVKVTLSILRLARPIDPELYRHLVS