Protein Info for BBR_RS10380 in Bifidobacterium breve UCC2003

Annotation: DUF5110 domain-containing protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 600 650 700 750 800 857 PF01055: Glyco_hydro_31_2nd" amino acids 225 to 529 (305 residues), 206.8 bits, see alignment E=8.7e-65 PF21365: Glyco_hydro_31_3rd" amino acids 537 to 632 (96 residues), 65.2 bits, see alignment E=9.1e-22 PF17137: DUF5110" amino acids 654 to 726 (73 residues), 31.9 bits, see alignment E=1.7e-11

Best Hits

KEGG orthology group: None (inferred from 65% identity to bad:BAD_1599)

Predicted SEED Role

"Maltodextrin glucosidase (EC 3.2.1.20)" in subsystem Maltose and Maltodextrin Utilization (EC 3.2.1.20)

MetaCyc Pathways

KEGG Metabolic Maps

Isozymes

Compare fitness of predicted isozymes for: 3.2.1.20

Use Curated BLAST to search for 3.2.1.20

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (857 amino acids)

>BBR_RS10380 DUF5110 domain-containing protein (Bifidobacterium breve UCC2003)
MSTFPQLATHPGMNPAAVIQGDRWRIGIITESLVRLEWQDNGKFEDHATQMIVNRDWLSD
DANGADGANRADGTSNPPKFTKTERDGLLIIDTPALRLTYDMQPFSKEGLSIVVKGVANS
QMNTWHYGEAQDGNLRGTARTLDAVDGEIELGLGVISRDGWAVLDDSASNVIVEGAEAAT
VKGEANPFGMWVIPREHPGKDLYVFGYGHRYIEAVQDFYKLTGPTPLLPRFALGNWWSRY
HRYTEAEYLELVDRFEQEGLPFTTAVIDMDWHLVDNVDPKYGSGWTGYTWNREFFPDPER
FQRILHEHGLRTTLNVHPRDGVRAFEDGYAKVAEHMGIDPAGGEPVEFDLTSPRFMEAYF
DLHHGLETLGTDFWWLDWQQGGVTRQKGLDPLWMLNHMHYLDSARDGRWPLTFSRYAGPG
SHRYPVGFSGDTVVTWESLKFQPYFTATASNIGYGWWSHDIGGHMFGYRDEELEARWYQL
GAFSPINRLHSTDSPFNGKEPWNFRPETECSMDDALRLRHELLPYLYTMNWRAAAEGRPL
VEPMYWQSPENVTAYGVEHEFRFGTELIVAPIVTPSDRNAQLAKTDVWLPQGTWFDFFTG
RRYEAGSAEGRKFEAWRGLDGIPVFAKAGGIVPLQPLDEELNGSLNSVDNPRYLEVAVFP
GANGAFDLKEDDGTNQAQPSDSALAVTHMDFRWEADGAVNAFEIAPVAGNVAAVPQQRTW
TVTFTGVAPVAVDELIVTVGGAEVVPDVSYDTEALSLSVTVADAPVTQAVSIHATNGLRY
ADDPAIEDAFTVLYNAQIDYLAKERAYRLIKADGARALNALHTLESTKSSYPGHEFDDSH
MPESVIQAIAEPLLRGL