Protein Info for BBR_RS10285 in Bifidobacterium breve UCC2003

Annotation: membrane protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 183 transmembrane" amino acids 83 to 106 (24 residues), see Phobius details amino acids 140 to 167 (28 residues), see Phobius details PF12089: DUF3566" amino acids 66 to 182 (117 residues), 125.9 bits, see alignment E=5.6e-41

Best Hits

KEGG orthology group: None (inferred from 76% identity to bll:BLJ_0007)

Predicted SEED Role

"FIG187021: hypothetical protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-positive bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

Find the best match in UniProt

Protein Sequence (183 amino acids)

>BBR_RS10285 membrane protein (Bifidobacterium breve UCC2003)
MNDQFDNNESEVIQPNIDNTVNDMVTPEPVREAPRKARSVSSEPEEVTSSPKTVRPAARR
STPRARRMSLSLTRVDAWSVAKVTFMLSIAGAIIQIVAAAVVWLLLDLVGVFSQITQIVS
STGLDAGGLDLKNVLSLTTVVSGVTIFSIIEVVIFTILATIIALIYNVVSSLVGGVHVTL
GDD