Protein Info for Ac3H11_917 in Acidovorax sp. GW101-3H11

Annotation: multi-domain regulatory protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 382 transmembrane" amino acids 67 to 86 (20 residues), see Phobius details PF13637: Ank_4" amino acids 297 to 346 (50 residues), 34.5 bits, see alignment 4.9e-12 amino acids 333 to 378 (46 residues), 30.4 bits, see alignment 9.9e-11 PF12796: Ank_2" amino acids 297 to 378 (82 residues), 50.3 bits, see alignment E=7.5e-17 PF13606: Ank_3" amino acids 325 to 353 (29 residues), 17.3 bits, see alignment (E = 1.3e-06) PF00023: Ank" amino acids 326 to 356 (31 residues), 25.7 bits, see alignment (E = 2.5e-09)

Best Hits

Predicted SEED Role

"multi-domain regulatory protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JS90 at UniProt or InterPro

Protein Sequence (382 amino acids)

>Ac3H11_917 multi-domain regulatory protein (Acidovorax sp. GW101-3H11)
MTRQDDELVRRYQEASEQEGARPGAHVREAVRAHAQMVAAAHTAAATPAPAAPAPARTAA
NQARWKISALATVAVVGLTGLLMLQFERGTPEERDTAFSHRRAETPAPSVQTAPAPAPSA
NPATKPLPEPLSAPPSATLPAPERQQEQEQERASTTTSKTTEAVAPKPATVPAPSPAHTP
VPPSAQPLAKTAPAPAPAAAPAPAPPAAADTATLPAPRAAGAMSGFPASPSPAAAPSAER
RERASAVPTEQPPPPAAAAAAAPAARSPLADSMARDNNAAATASVQKRLGASLPVNLWDA
ARAGNPQQVESLIHQGTPVDARDNEGRTALMLAAMHGHTTTAQKLLALGANPRLVDREGM
NAAQWAAHRGHARLAELLEAAR