Protein Info for Ac3H11_904 in Acidovorax sp. GW101-3H11

Annotation: Chemotactic transducer-related protein

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 542 PF13185: GAF_2" amino acids 26 to 194 (169 residues), 44.8 bits, see alignment E=3.7e-15 PF01590: GAF" amino acids 28 to 194 (167 residues), 52.9 bits, see alignment E=1.4e-17 PF13492: GAF_3" amino acids 94 to 196 (103 residues), 35.8 bits, see alignment E=2.4e-12 PF01966: HD" amino acids 226 to 298 (73 residues), 24.9 bits, see alignment E=5.3e-09 PF13487: HD_5" amino acids 393 to 509 (117 residues), 131.1 bits, see alignment E=9.6e-42

Best Hits

KEGG orthology group: None (inferred from 73% identity to adn:Alide_2444)

Predicted SEED Role

"Chemotactic transducer-related protein"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JRV4 at UniProt or InterPro

Protein Sequence (542 amino acids)

>Ac3H11_904 Chemotactic transducer-related protein (Acidovorax sp. GW101-3H11)
MSKESTIHLFRRLEQLNGIGAALSRERDIDRLLENILEAAKTITGADGGTLYSVTEDQSA
LKFEILRTDSLGIRLGGTTGKPIDLPLLPLRTADGAPNDSLVAAHSAIHDRTVNIADAYS
AAGFDFSGTRAFDQRTGYRSQSFLTVPMKNHDRELIGVLQLINARDPDTGDVITFSQADQ
SLAESLASQAAIALTNRLLITQLERLFESFVNLINLAIDEKSPYTGGHCQRVPALTMMLA
EAVDATREGPLAGFSMTDRDRYELKMAGLLHDCGKITTPVHVVDKATKLQTIYDRIGLVD
TRFEVLKRDAELAALRRQLALRPVVDARAEGQELQALQHEIHALEEDREFLRRSNTGTEA
MRPEDQQRVRDIAAMRHWRNPQGVQTSFLSAEEVENLTIRAGTLNQSERDTINYHIVATI
KMLETLPWPRHLKNVPEYAGGHHERMDGKGYPRGLTRDQMSLQARMMGIADIFEALTAAD
RPYKSGMTLSQALAIMCRMRDNGHIDPDLFEVFVREGVYLRYGQAFLDAGQVDGVDIGAL
GF