Protein Info for Ac3H11_836 in Acidovorax sp. GW101-3H11
Annotation: Ubiquinone biosynthesis monooxygenase UbiB
These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.
Protein Families and Features
Best Hits
Predicted SEED Role
"Ubiquinone biosynthesis monooxygenase UbiB" in subsystem Ubiquinone Biosynthesis
MetaCyc Pathways
- superpathway of chorismate metabolism (44/59 steps found)
- superpathway of ubiquinol-8 biosynthesis (early decarboxylation) (10/12 steps found)
- ubiquinol-8 biosynthesis (early decarboxylation) (7/8 steps found)
Sequence Analysis Tools
PaperBLAST (search for papers about homologs of this protein)
Search CDD (the Conserved Domains Database, which includes COG and superfam)
Predict protein localization: PSORTb (Gram-negative bacteria)
Predict transmembrane helices and signal peptides: Phobius
Check the current SEED with FIGfam search
Find homologs in fast.genomics or the ENIGMA genome browser
See A0A165JDU7 at UniProt or InterPro
Protein Sequence (446 amino acids)
>Ac3H11_836 Ubiquinone biosynthesis monooxygenase UbiB (Acidovorax sp. GW101-3H11) MAKAKTEAPRTGKLARSAITGLAAARIGMAELSHRTRKRSAQAQAEHEAALGRILFGALG QLRGSALKVSQLLSMHPQLLPEGVRRELARAHHQAPPLNRALVGRVFRQAFGQEPEALFE HFEPTAFAAASLGQVHRAQLAGHGTVAVKVQYPGIAATIASDMQLMRAALRALAHTDLPL PTDTVMDGVMAEIEATLLREVDYLQEAEQLQWFAQHAARPGVVMAQPILSHTRAQVLTQQ FVPGQPLQAWLATQPSQSQRDQAGQHLWDWFMHCIFVLGRVHADPHPGNFVFAPDGTVGV LDFGCTRSLSAGFRAQVRQAWSALLRPADDPERHALVLQAYQALGLAGADVSLPTYRTDL APALAEMQAWQIEPFTQAVFDFGTKTPPPLTPPADQRVLGRHLQQVPREMPAFERMWMGL MHLLTQLGARVHTRGAHWLAPTGANP