Protein Info for Ac3H11_808 in Acidovorax sp. GW101-3H11

Annotation: Preprotein translocase secY subunit (TC 3.A.5.1.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 439 transmembrane" amino acids 21 to 39 (19 residues), see Phobius details amino acids 73 to 97 (25 residues), see Phobius details amino acids 118 to 137 (20 residues), see Phobius details amino acids 149 to 169 (21 residues), see Phobius details amino acids 181 to 202 (22 residues), see Phobius details amino acids 208 to 231 (24 residues), see Phobius details amino acids 268 to 290 (23 residues), see Phobius details amino acids 311 to 332 (22 residues), see Phobius details amino acids 365 to 388 (24 residues), see Phobius details amino acids 394 to 413 (20 residues), see Phobius details TIGR00967: preprotein translocase, SecY subunit" amino acids 18 to 424 (407 residues), 437.8 bits, see alignment E=2.1e-135 PF00344: SecY" amino acids 74 to 412 (339 residues), 391.7 bits, see alignment E=1.3e-121

Best Hits

Swiss-Prot: 68% identical to SECY_ECOL6: Protein translocase subunit SecY (secY) from Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC)

KEGG orthology group: K03076, preprotein translocase subunit SecY (inferred from 95% identity to adk:Alide2_4357)

MetaCyc: 68% identical to Sec translocon subunit SecY (Escherichia coli K-12 substr. MG1655)

Predicted SEED Role

"Preprotein translocase secY subunit (TC 3.A.5.1.1)" (TC 3.A.5.1.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JD66 at UniProt or InterPro

Protein Sequence (439 amino acids)

>Ac3H11_808 Preprotein translocase secY subunit (TC 3.A.5.1.1) (Acidovorax sp. GW101-3H11)
VATSAAQIAKTGKFGDLRRRLVFLLLALVVYRIGAHIPVPGIDPAQLQQLFSGQQGGILN
LFNMFSGGALSRFTVFALGIMPYISASIIMQLMTYVLPAFEQLKKEGEAGRRKITQYTRY
GTLGLALFQSLGIAVALESSAGLVLSPGFGFRLTAVVSLTAGTMFLMWLGEQITERGLGN
GISILIFAGIAAGLPSSIGGLLELVRTGAMSILAAIFIVLVVGLVTYFVVFVERGQRKIL
VNYARRQVGNKVYGGQSSHLPLKLNMAGVIPPIFASSIILLPATVVNWFSAGESMRWLKD
ISGALTPGQPIYVMFYAAAIIFFCFFYTALVFNSRETADNLKKSGAFIPGIRPGEQTARY
IDKILVRLTLAGAVYITFVCLLPEFLILKYNVPFYFGGTSLLIIVVVTMDFMAQVQNYMM
SQQYESLLKKANFKGNPGG