Protein Info for Ac3H11_677 in Acidovorax sp. GW101-3H11

Annotation: FIG000875: Thioredoxin domain-containing protein EC-YbbN

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 302 PF00085: Thioredoxin" amino acids 3 to 103 (101 residues), 94.6 bits, see alignment E=8.2e-31 TIGR01068: thioredoxin" amino acids 7 to 105 (99 residues), 101.9 bits, see alignment E=9.5e-34 PF13098: Thioredoxin_2" amino acids 19 to 102 (84 residues), 31.5 bits, see alignment E=4.8e-11 PF14559: TPR_19" amino acids 124 to 180 (57 residues), 32.4 bits, see alignment E=2.4e-11 PF14561: TPR_20" amino acids 209 to 280 (72 residues), 57.5 bits, see alignment E=3.5e-19

Best Hits

KEGG orthology group: K05838, putative thioredoxin (inferred from 84% identity to adn:Alide_4127)

Predicted SEED Role

"FIG000875: Thioredoxin domain-containing protein EC-YbbN"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JWA3 at UniProt or InterPro

Protein Sequence (302 amino acids)

>Ac3H11_677 FIG000875: Thioredoxin domain-containing protein EC-YbbN (Acidovorax sp. GW101-3H11)
MIDVTVENFEAEVVAASMNVPVLVDFWAPWCGPCKSLGPVLEKLETEYAGRFKLAKIDSD
QEQQLAGMFGIRSIPTCVLLMNGQPVDGFMGALPEGQVRAFLDKHVPTAEEMVAEAEEEE
AQDALADGDTGTALEKLQHAVVTDPSNDDARFDYVKLLLQLRREDDAKVAFAPVIAKAAV
SRKLGALKVWMDAIDFVAIGAYGERVEADFEAKITANKRDFDTRYARARWLMAQQRWTDA
MDELLEILMRDKAWNEEAARKTYVAILEVIEAPKPKVAEGQIPPEDPVVATYRRRLSSVV
LS