Protein Info for Ac3H11_622 in Acidovorax sp. GW101-3H11

Annotation: Transcriptional regulator, LysR family

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 314 transmembrane" amino acids 236 to 256 (21 residues), see Phobius details amino acids 271 to 286 (16 residues), see Phobius details PF00126: HTH_1" amino acids 16 to 73 (58 residues), 75.5 bits, see alignment E=2.5e-25 PF03466: LysR_substrate" amino acids 99 to 304 (206 residues), 106.7 bits, see alignment E=1.1e-34

Best Hits

KEGG orthology group: None (inferred from 68% identity to yen:YE4033)

Predicted SEED Role

"Transcriptional regulator, LysR family"

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165IS33 at UniProt or InterPro

Protein Sequence (314 amino acids)

>Ac3H11_622 Transcriptional regulator, LysR family (Acidovorax sp. GW101-3H11)
MSTTPSALQPGADRIELMQTFVRIVEAGSLSAAAQQLGTSQPTVSRRLQALERSLGIKLL
QRSTHVMKLTEDGDRCFAHAKALLEDWRAMEDDLRGTADTPRGTLRVLAPHAFGQDQFIA
PLMAYLRRYPEVDVEWMLHDRRPNFIAEGIDCSIQVGAVDDPSVVAVRLAEVPRIVLAAP
ALMAGRPTPQHAQDLRPLPWLALSTFYRREVTLTQEPGGEAHTFGITPRLATDSLYALRS
AALAGLGACISSAWIVDNDVRQGNLLHLVPNWHAAPLPVYLVYPYARFYPARLRLFLEAM
RGAMPGLVGMRAVG