Protein Info for Ac3H11_515 in Acidovorax sp. GW101-3H11

Annotation: Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 300 350 400 450 500 550 587 signal peptide" amino acids 1 to 26 (26 residues), see Phobius details transmembrane" amino acids 185 to 206 (22 residues), see Phobius details PF12729: 4HB_MCP_1" amino acids 3 to 163 (161 residues), 51.2 bits, see alignment E=1.7e-17 PF00672: HAMP" amino acids 205 to 256 (52 residues), 48.5 bits, see alignment 1.3e-16 PF00015: MCPsignal" amino acids 320 to 476 (157 residues), 185.3 bits, see alignment E=1.3e-58

Best Hits

KEGG orthology group: None (inferred from 54% identity to adk:Alide2_4396)

Predicted SEED Role

"Methyl-accepting chemotaxis protein I (serine chemoreceptor protein)" in subsystem Bacterial Chemotaxis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LIP8 at UniProt or InterPro

Protein Sequence (587 amino acids)

>Ac3H11_515 Methyl-accepting chemotaxis protein I (serine chemoreceptor protein) (Acidovorax sp. GW101-3H11)
MNNLKIGARLSLAFGLVLLITAAIAATGVWRLAALKDASMRIANVEMQRNALAQEWKAAI
DLNWVRASASLKATDAGYIESLSADMAATSQRASEAQKKLEALVDDATDKVLMERVATAR
AAYVGARAKLLERKKAGEDVFALVDSELKPLAGAYLQSLADVASNTHKQLDEFERSIIQA
AGASQWALALGAVVSVVLGALFALWTTRSIVGPVHRAVQAADEISHGNLAVPIHEDGKDE
MAHLLRSLGEMQQNLARIVGHVRSGSENVATASSEISQGNNDLSARTEQQASALQQTAAS
MEQLNSTVRQNADNARQANQLAQSASTVAVQGGQVVGQVVDTMKGIHDSSSKIADIIGVI
DGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAGRSAEAAKQIKALIQDSVERV
GLGSALVDQAGATMTEVVGAIRRVTDLMGEISAASSEQSQGVAQVGEAVTQMDQVTQQNA
ALVEEMAAAASSLNHQAQDLVSTVAFFKLSAGQAMAAATATAAAPLRVAASGAGRVPAAP
TGTARLAPQAKPRTDSPKALGSKPLRSPARGSAPRAAEGNETDWESF