Protein Info for Ac3H11_4984 in Acidovorax sp. GW101-3H11

Annotation: High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 296 transmembrane" amino acids 13 to 34 (22 residues), see Phobius details amino acids 40 to 60 (21 residues), see Phobius details amino acids 66 to 85 (20 residues), see Phobius details amino acids 98 to 121 (24 residues), see Phobius details amino acids 147 to 168 (22 residues), see Phobius details amino acids 194 to 220 (27 residues), see Phobius details amino acids 222 to 262 (41 residues), see Phobius details amino acids 268 to 288 (21 residues), see Phobius details PF02653: BPD_transp_2" amino acids 17 to 280 (264 residues), 118.1 bits, see alignment E=2.1e-38

Best Hits

KEGG orthology group: K01997, branched-chain amino acid transport system permease protein (inferred from 91% identity to adk:Alide2_4265)

Predicted SEED Role

"High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1)" in subsystem ABC transporter branched-chain amino acid (TC 3.A.1.4.1) (TC 3.A.1.4.1)

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165JIW3 at UniProt or InterPro

Protein Sequence (296 amino acids)

>Ac3H11_4984 High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1) (Acidovorax sp. GW101-3H11)
MTGNFDWAYLFEISLTGIAGGGLYALAALAFVMVYKATRVVNIAIGELLMVGAYLFFTFA
SMFALPLWLAIPAAVLGTGLLGALIERTMIRPLLGEPPISVFMVTVGLASVLVGLVEMIW
TADQRRLPDFMPTQPIMVGDAFLAPKVFWGAVIAIVFIAAVLVVFRFWRGGVALRATASD
QAAAYSVGINVPRVFSLAWVASAMLAAISGIIVGSIGGISSSMGVFGLSVLVVVIVGGLD
SVLGALIGGILIGLIEALAGAYLGGEYKLLATFIVLVAVLLVRPYGLFGTHEIERL