Protein Info for Ac3H11_4826 in Acidovorax sp. GW101-3H11

Annotation: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 250 290 transmembrane" amino acids 26 to 47 (22 residues), see Phobius details amino acids 90 to 113 (24 residues), see Phobius details amino acids 128 to 161 (34 residues), see Phobius details amino acids 203 to 230 (28 residues), see Phobius details amino acids 249 to 274 (26 residues), see Phobius details PF00528: BPD_transp_1" amino acids 104 to 287 (184 residues), 123 bits, see alignment E=1.3e-39

Best Hits

Swiss-Prot: 46% identical to GSID_SHIFL: Glutathione transport system permease protein GsiD (gsiD) from Shigella flexneri

KEGG orthology group: K02034, peptide/nickel transport system permease protein (inferred from 86% identity to vei:Veis_0136)

MetaCyc: 45% identical to glutathione ABC transporter membrane subunit GsiD (Escherichia coli K-12 substr. MG1655)
RXN0-11 [EC: 7.4.2.10]

Predicted SEED Role

"Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)" in subsystem ABC transporter dipeptide (TC 3.A.1.5.2) (TC 3.A.1.5.2)

Isozymes

No predicted isozymes

Use Curated BLAST to search for 7.4.2.10

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Compare to protein structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165LA25 at UniProt or InterPro

Protein Sequence (290 amino acids)

>Ac3H11_4826 Dipeptide transport system permease protein DppC (TC 3.A.1.5.2) (Acidovorax sp. GW101-3H11)
MSAAIPSPSATSAPGWLHRALRHRSFVIGAVLSLLLILAAALSLVWTPWSPYEMDLANKL
AGPSGTHWLGTDAFGRDVASLLLVGARNSILVGVIAVGIGLTIGTALGLLAAAKRGWVEE
LIMRLADFTFAFPAILSAIMMTAVFGAGIVNSIIAIGIFNIPTFARVTRASANAVWSREY
IMASRACGKGSWRITIEHVLPNILSVLIVQATIQFAIAILAEAALSYLGLGTQPPQPSWG
RMLSEAQTLMFQAPLLAVWPGVAIALAVLGLNLLGDGLRDLLDPRLSRKR