Protein Info for Ac3H11_4796 in Acidovorax sp. GW101-3H11

Annotation: Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes

These analyses and tools can help you predict a protein's function, but be skeptical. For enzymes, over 10% of annotations from KEGG or SEED are probably incorrect. For other types of proteins, the error rates may be much higher. MetaCyc and Swiss-Prot have low error rates, but the best hits in these databases are often quite distant, so this protein's function may not be the same. TIGRFam has low error rates. Finally, many experimentally-characterized proteins are not in any of these databases. To find relevant papers, use PaperBLAST.

Protein Families and Features

1 50 100 150 200 transmembrane" amino acids 66 to 84 (19 residues), see Phobius details

Best Hits

KEGG orthology group: K03690, hypothetical protein (inferred from 80% identity to dac:Daci_5459)

Predicted SEED Role

"Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes" in subsystem Ubiquinone Biosynthesis

Sequence Analysis Tools

PaperBLAST (search for papers about homologs of this protein)

Search CDD (the Conserved Domains Database, which includes COG and superfam)

Search structures

Predict protein localization: PSORTb (Gram-negative bacteria)

Predict transmembrane helices and signal peptides: Phobius

Check the current SEED with FIGfam search

Find homologs in fast.genomics or the ENIGMA genome browser

See A0A165L992 at UniProt or InterPro

Protein Sequence (200 amino acids)

>Ac3H11_4796 Protein YigP (COG3165) clustered with ubiquinone biosynthetic genes (Acidovorax sp. GW101-3H11)
MATPQSPFSFLDGLFERVAAGPQPPQWLVHEVQQRLVLFLNHVLMQEQEAMDRLVRQKGR
VARVQWRVYSLALVITPAGLFNLAPETAVPDLQLHVTETSPFTLAQGALRGDKPAIRIEG
DVQLAAEINWLVDHVRWDVEEDLAHVIGDAPAHTVAQVASRGAQALRQFVGARMAAGGAA
ASAPSAPLAPAASPSPQAGA